Author

Ming Yu

Fred Hutch Cancer CenterORCID 0000-0001-8692-6135Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Ming Yu1 paper

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

William M. GradyiD· 3 shared Kelly T. CarteriD· 2 shared Angelo Michael De MarzoiD· 1 shared Christina M. KendziorskiiD· 1 shared Dan J. WoodcockiD· 1 shared Deepti ReddiiD· 1 shared Elena BaraznenokiD· 1 shared Elizabeth DonatoiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersCancer Biology

William M. GradyORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 4, 2026

Spatial multi-omics and single-cell transcriptomics uncover senescence-associated cellular programs during colon adenoma to cancer progression

Ming Yu, Yumo Xie, Lena Allen…·William M. Grady

The paper uses spatial multi-omics and single-cell transcriptomics to identify senescence-associated programs in colon adenoma to cancer progression, finding GDF15 mediates senescence-stemness coupling and immune exclusion.

DOI 10.64898/2026.08.06.743310

humanspatial transcriptomics

𝕏 PostBluesky

PathologyLaboratory InvestigationPeer-reviewedJun 16, 2026

Assessing the effects of a 3D pathology tissue-processing workflow on downstream molecular analyses

Elena Baraznenok, Huai-Ching Hsieh, Lydia Lan…·Jonathan T.C. Liu

This study evaluates the impact of a 3D pathology workflow on DNA, RNA, and protein integrity, showing minimal effect on amplifiability and transcriptomic profiles.

1 citation

humanDNA methylation

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BioinformaticsbioRxivPreprintMar 23, 2026

Translating Histopathology Foundation Model Embeddings into Cellular and Molecular Features for Clinical Studies

Saishi Cui, Zhining Sui, Ziyi Li…·Wei Sun

STpath translates histopathology image embeddings into cell-type composition and gene expression estimates for clinical applications.

DOI 10.64898/2026.03.17.711896

humanspatial transcriptomics

𝕏 PostBluesky