Author

Jianye Ge

University of North Texas Health Science CenterORCID 0000-0001-8724-075XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 3 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:simulation· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Bruce BudowleiD· 4 shared August E. WoerneriD· 2 shared Matthew B. ScholziD· 2 shared Meng HuangiD· 2 shared Shakeel JessaiD· 2 shared Stephen TurneriD· 2 shared VP NagrajiD· 2 shared Xuewen WangiD· 2 shared

Activity by Year

2022-2023 · peak 3/yr

Co-Author Collaboration Network

9 top collaborators · 29 mutual co-author links

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4 shared papersBioinformatics

Bruce BudowleORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 15, 2023

Precise and ultrafast tandem repeat variant detection in massively parallel sequencing reads

Xuewen Wang, Meng Huang, Bruce Budowle, Jianye Ge

TRcaller detects tandem repeat alleles from short- and long-read sequences with higher accuracy and speed than existing tools.

2 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedNov 19, 2022

USAT: a Bioinformatic Toolkit to Facilitate Interpretation and Comparative Visualization of Tandem Repeat Sequences

Xuewen Wang, Bruce Budowle, Jianye Ge

USAT is a toolkit for analyzing tandem repeat haplotypes, offering allele size conversion, sequence comparison, visualization, and benchmarking on CODIS STR loci.

10 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 28, 2022

vcferr: Development, Validation, and Application of a SNP Genotyping Error Simulation Framework

VP Nagraj, Matthew B. Scholz, Shakeel Jessa…·Stephen Turner

vcferr simulates SNP genotyping errors in VCF files to assess their impact on kinship analysis.

1 citation

whole-exome sequencingsimulation

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BioinformaticsF1000ResearchPeer-reviewedJan 7, 2022

skater: An R package for SNP-based Kinship Analysis, Testing, and Evaluation

Stephen Turner, VP Nagraj, Matthew Scholz…·Bruce Budowle

The paper introduces the skater R package for SNP-based kinship analysis, testing, and evaluation, providing tools for pedigree data handling and relationship degree inference.

5 citations

statistical modelsoftware / tool

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