Author

Xuewen Wang

University of North TexasORCID 0000-0003-2820-9255Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:whole-genome sequencing· 4 Approach:statistical model· 3 Research Focus:variant calling· 3 Organism:human· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1

Frequent Co-Authors

Bruce BudowleiD· 2 shared Jianye GeiD· 2 shared August E. WoerneriD· 1 shared Fulin YaniD· 1 shared Huang Meng· 1 shared Jonathan L. KingiD· 1 shared Lei DuaniD· 1 shared Linyue TangiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Bruce BudowleORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 22, 2025

StrPhaser constructs tandem repeat alleles from VCF data

Xuewen Wang, Jonathan L. King, Huang Meng…·August E. Woerner

StrPhaser constructs tandem repeat alleles from VCF data, achieving 91% average allele accuracy and better recovery of longer STR alleles than existing methods.

DOI 10.1101/2025.01.22.634325

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMay 30, 2024

Haploid-phased chromosomal telomere to telomere genome assembly of Uncaria rhynchophylla accelerating gene mining on the biosynthesis of medicinal alkaloids

Tao Hu, Lei Duan, Liyang Shangguan…·Mingsheng Zhang

This paper presents a chromosome-level genome assembly of Uncaria rhynchophylla and identifies genes involved in (iso)rhynchophylline biosynthesis.

DOI 10.1101/2024.05.30.596046

plant (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 15, 2023

Precise and ultrafast tandem repeat variant detection in massively parallel sequencing reads

Xuewen Wang, Meng Huang, Bruce Budowle, Jianye Ge

TRcaller detects tandem repeat alleles from short- and long-read sequences with higher accuracy and speed than existing tools.

2 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedNov 19, 2022

USAT: a Bioinformatic Toolkit to Facilitate Interpretation and Comparative Visualization of Tandem Repeat Sequences

Xuewen Wang, Bruce Budowle, Jianye Ge

USAT is a toolkit for analyzing tandem repeat haplotypes, offering allele size conversion, sequence comparison, visualization, and benchmarking on CODIS STR loci.

10 citations

humanwhole-genome sequencing

𝕏 PostBluesky