Tim Scherr

ObiWan-Microbi provides a cloud-based platform for semi-automated image annotation in microfluidic live-cell imaging using deep learning segmentation.

microbeSEG provides a deep learning tool for automated cell segmentation in microbial cultures, achieving accurate results within 45 minutes of user time.

This paper introduces a graph-based cell tracking algorithm with few parameters and automatic segmentation error correction, showing strong performance on degraded segmentation data.

The paper improves a competitive cell tracking algorithm by optimizing training parameters and data augmentation, achieving better performance in the Cell Tracking Challenge 2021.