Author

Nadiya Khyzha

Fred Hutch Cancer CenterORCID 0000-0001-8804-0039Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:benchmarking· 2 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Kami AhmadiD· 2 shared Steven HenikoffiD· 2 shared Aditya Parmar· 1 shared Alex ZeviniD· 1 shared Azad AlizadaiD· 1 shared Chun Yin Mak· 1 shared Eric HollandiD· 1 shared Ian C. TobiasiD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersCancer Biology

Kami AhmadORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 22, 2026

FFPE-CUTAC: A Single Assay, Multiple Layers

Yiyang Niu, Qunzhi Xu, Chun Yin Mak…·Ye Zheng

FFPE-CUTAC is a new assay for analyzing FFPE tissues that provides regulatory and copy-number profiles, showing robustness over time and compatibility with RNA-seq.

DOI 10.64898/2026.09.21.753320

humanATAC-seq

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GenomicsbioRxivPreprintOct 25, 2022

Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-κB binding

Liangxi Wang, Tiegh Taylor, Kumaragurubaran Rathnakumar…·Michael D. Wilson

The paper analyzes RELA-bound transposable elements across species to show their ancient and lineage-specific contributions to NF-κB binding and inflammation.

1 citation

humanmouse

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GenomicsNature MethodsPeer-reviewedOct 3, 2022

Profiling RNA at chromatin targets in situ by antibody-targeted tagmentation

Nadiya Khyzha, Steven Henikoff, Kami Ahmad

The paper introduces RT&Tag, a method to profile chromatin-associated RNAs by antibody-targeted tagmentation, demonstrating its ability to capture noncoding RNAs and m6A-modified mRNAs in Drosophila cells.

31 citations

DrosophilaChIP-seq

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