Author

Shuanghong Xue

University of California San DiegoORCID 0000-0001-9066-4625Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:Hi-C· 1 Assay:metagenomics· 1

Frequent Co-Authors

John Lalith Charles RichardiD· 2 shared Sheng ZhongiD· 2 shared Xingzhao WeniD· 2 shared Zhijie QiiD· 2 shared Bing ReniD· 1 shared Chien-Ju CheniD· 1 shared Jian MaiD· 1 shared Junchen CheniD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersMolecular Biology

John Lalith Charles RichardORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 4, 2024

Genome-Wide Mapping of RNA-Protein Associations via Sequencing

Zhijie Qi, Shuanghong Xue, Junchen Chen…·Sheng Zhong

PRIM-seq maps RNA-protein interactions by generating chimeric DNA sequences, revealing over 350,000 RNA-protein pairs in human cells.

1 citation

humanproteomics

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GenomicsNature CommunicationsPeer-reviewedOct 16, 2023

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells

Riccardo Calandrelli, Xingzhao Wen, John Lalith Charles Richard…·Sheng Zhong

This study investigates how chromatin-associated RNA interacts with 3D genome organization in human cells, revealing a feedback loop between RNA distribution and chromatin structure.

57 citationstop 3%

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