Author

Jason Kunisaki

Washington University in St. LouisORCID 0000-0001-9133-2753Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant effect prediction· 2 Assay:whole-exome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Malachi GriffithiD· 4 shared Katie Marie CampbelliD· 3 shared Obi L. GriffithiD· 3 shared Zachary L. SkidmoreiD· 3 shared Benjamin J. AinscoughiD· 2 shared Jasreet HundaliD· 2 shared Kelsy C. CottoiD· 2 shared Kilannin KrysiakiD· 2 shared

Activity by Year

2016-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersBioinformatics

Malachi GriffithORCID

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4 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedMar 22, 2023

RegTools: Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer

Kelsy C. Cotto, Yang-Yang Feng, Avinash Ramu…·Malachi Griffith

RegTools identifies splice-associated variants in cancer by integrating genomic and transcriptomic data across 9,000 tumor samples, discovering 235,778 splicing events.

131 citationstop 1%

humanwhole-genome sequencing

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GeneticsGenetics in MedicinePeer-reviewedOct 3, 2018

Standard operating procedure for somatic variant refinement of tumor sequencing data

Erica Kay Barnell, Peter Ronning, Katie Marie Campbell…·Obi L. Griffith

This paper establishes a standard operating procedure for manual refinement of somatic variants in tumor sequencing data to improve consistency and reproducibility.

94 citationstop 5%

whole-exome sequencingwhole-genome sequencing

𝕏 PostBluesky

GenomicsNature CommunicationsPeer-reviewedAug 22, 2018

The prognostic effects of somatic mutations in ER-positive breast cancer

Obi L. Griffith, Nicholas C. Spies, Meenakshi Anurag…·Matthew J. Ellis

The paper identifies somatic mutations with prognostic effects in ER+ breast cancer using genomic data from multiple cohorts.

130 citationstop 5%

humanwhole-exome sequencing

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BioinformaticsBioinformaticsPeer-reviewedJun 10, 2016

GenVisR: Genomic Visualizations in R

Zachary L Skidmore, Alex H Wagner, Robert Lesurf…·Malachi Griffith

GenVisR provides customizable genomic visualization tools in R for cohort-level genome analyses, leveraging ggplot2 and Bioconductor.

DOI 10.1093/bioinformatics/btw325

whole-genome sequencingexperimental assay

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