Author

Matthew J. Ellis

Baylor College of MedicineORCID 0000-0002-8467-8534Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Assay:multiome· 1 Assay:proteomics· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Meenakshi AnuragiD· 2 shared Alaina N. LewisiD· 1 shared Alana L. WelmiD· 1 shared Alexander B. SaltzmaniD· 1 shared Anna MalovannayaiD· 1 shared Antrix JainiD· 1 shared Belinda Jane YeoiD· 1 shared Benjamin J. AinscoughiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersCancer Biology

Meenakshi AnuragORCID

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2 papers

Recent·Most cited

Patient-Derived Xenograft-Guided Prediction of Chemotherapy Response in Triple-Negative Breast Cancer

Jonathan Thomas Lei, Lacey Elizabeth Dobrolecki, Chen Lu Huang, Ramakrishnan Rajaram Srinivasan, Suhas V. Vasaikar, Alaina N. Lewis, Christina Sallas, Na Zhao, Jin Cao, John David Landua, Jacob B. Pilcher, Chang In Moon, Yuxing Liao, Susan Galloway Hilsenbeck, Mothaffar Fahed Rimawi, , Michael T. Lewis

This paper develops chemotherapy-specific predictors for triple-negative breast cancer using patient-derived xenografts and multi-omic data, achieving high AUROC scores for response prediction.

bioRxiv · Dec 9, 2024 · PreprintCancer Biology

The prognostic effects of somatic mutations in ER-positive breast cancer

Obi L. Griffith, Nicholas C. Spies, Meenakshi Anurag, Malachi Griffith, Jingqin Rosy Luo, Dongsheng Tu, Belinda Jane Yeo, Jason Kunisaki, Christopher A. Miller, Kilannin Krysiak, Jasreet Hundal, Benjamin J. Ainscough, Zachary L. Skidmore, Katie Marie Campbell, Runjun D. Kumar, , Matthew J. Ellis

The paper identifies somatic mutations with prognostic effects in ER+ breast cancer using genomic data from multiple cohorts.

Nature Communications · Aug 22, 2018Peer-reviewedGenomics