Author

Dunja Mrdjen

Stanford MedicineORCID 0000-0001-9269-2806Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:clustering· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1

Frequent Co-Authors

Bryan J. CannoniD· 3 shared Michael AngeloiD· 3 shared Dmitry TebaykiniD· 2 shared Erin McCaffreyiD· 2 shared Kathleen S. MontineiD· 2 shared Kausalia VijayaragavaniD· 2 shared M. Ryan CorcesiD· 2 shared Noah F. GreenwaldiD· 2 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersImmunology

Bryan J. CannonORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologybioRxivPreprintJun 19, 2026

APOE4 Drives Uniquely Dysfunctional Human Microglial States in Alzheimer's Disease

Rachel Ee, Meelad Amouzgar, Jumana Afaghani…·Sean C. Bendall

This study identifies APOE4/4-driven dysfunctional microglial states in Alzheimer's disease through multiomic analysis, revealing shifts toward terminal states with metabolic disruption and inflammatory signaling.

DOI 10.64898/2026.06.18.733295

humanproteomics

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BioinformaticsNature CommunicationsPeer-reviewedAug 1, 2023

Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering

Candace C. Liu, Noah F. Greenwald, Alex Kong…·Michael Angelo

The paper introduces Pixie, a pipeline for robust pixel-level clustering in multiplexed imaging data to improve phenotyping and annotation across biological contexts.

88 citationstop 1%

imagingstatistical model

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Systems BiologyActa Neuropathologica CommunicationsPeer-reviewedNov 4, 2022

Single-cell Spatial Proteomic Imaging for Human Neuropathology

Kausalia Vijayaragavan, Bryan J. Cannon, Dmitry Tebaykin…·Sean C. Bendall

This study uses spatial proteomics to analyze human brain tissues and identifies proteopathies and cell interactions in Alzheimer's disease.

37 citationstop 4%

humanproteomics

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