Author

Alexis Sullivan

NYU Langone HealthORCID 0000-0001-9296-8112Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:DNA methylation· 1 Research Focus:ecology & biodiversity· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Caichen DuaniD· 2 shared Chenzhen ZhangiD· 2 shared Fanny MatheisiD· 2 shared George H. PerryiD· 2 shared Jonas SchlüteriD· 2 shared William JogiaiD· 2 shared Abigail J. JohnsoniD· 1 shared Abrielle Swartz· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMicrobiology

Caichen DuanORCID

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4 papers

Recent·Most cited

MicrobiologyNaturePeer-reviewedSep 30, 2026

Sugar-rich foods exacerbate antibiotic-induced microbiome injury

Anqi Dai, Annamaria Ballweg, William Jogia…·Jonathan U. Peled

The paper links sugar-rich foods to microbiome disruption during antibiotic treatment in patients and mice.

8 citationstop 2%

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MicrobiologybioRxivPreprintNov 12, 2025

Sugar ABC transporter repertoires predict ecological dynamics in gut microbiome communities

Harsh Maan, William Jogia, Caichen Duan…·Jonas Schlüter

The paper identifies sugar ABC transporters as predictors of microbial community dynamics in response to dietary sugars using integrated genomics and experimental approaches.

1 citation

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GenomicsGigaSciencePeer-reviewedOct 1, 2021

A chromosome-level genome assembly for the Eastern Fence Lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology

Aundrea K. Westfall, Rory S. Telemeco, Mariana B. Grizante…·Tonia S. Schwartz

The paper presents a chromosome-level genome assembly for Sceloporus undulatus and evaluates its utility for genomic analysis across related species.

29 citations

multiple specieswhole-genome sequencing

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Molecular BiologyEcology and EvolutionPeer-reviewedJul 31, 2018

A novel environmental DNA (eDNA) sampling method for aye-ayes from their feeding traces

Megan L. Aylward, Alexis Sullivan, George H. Perry…·Edward E. Louis

This paper tests a target capture method to retrieve mitochondrial DNA from aye-aye feeding traces, successfully obtaining near-complete genomes for population genetic monitoring.

37 citations

DNA methylationexperimental assay

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