Author

Caichen Duan

NYU Langone HealthORCID 0000-0002-8634-2006Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexis P. SullivaniD· 2 shared Chenzhen ZhangiD· 2 shared Fanny MatheisiD· 2 shared Jonas SchlüteriD· 2 shared William JogiaiD· 2 shared Abigail J. JohnsoniD· 1 shared Abrielle Swartz· 1 shared Adam Warren· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Alexis P. SullivanORCID

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2 papers

Recent·Most cited

Sugar-rich foods exacerbate antibiotic-induced microbiome injury

Anqi Dai, Annamaria Ballweg, William Jogia, Madhumitha Rangesa, Peter A. Adintori, Mirae Baichoo, Tyler Funnell, Teng Fei, Nicholas R. Waters, Abrielle Swartz, Sukanya Sahu, Brianna Gipson, Sandeep S. Raj, Eiko Hayase, Zoe Pierce, , Jonathan U. Peled

The paper links sugar-rich foods to microbiome disruption during antibiotic treatment in patients and mice.

Nature · Sep 30, 2026Peer-reviewedMicrobiology

Sugar ABC transporter repertoires predict ecological dynamics in gut microbiome communities

Harsh Maan, William Jogia, Caichen Duan, Fanny Matheis, Eric K. Nishimoto, Chenzhen Zhang, Alexis P. Sullivan, Jonas Schlüter

The paper identifies sugar ABC transporters as predictors of microbial community dynamics in response to dietary sugars using integrated genomics and experimental approaches.

bioRxiv · Nov 12, 2025 · PreprintMicrobiology