Author

Shiyang Zhang

Yale UniversityORCID 0000-0001-9306-8423Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1

Frequent Co-Authors

David van DijkiD· 2 shared Syed Asad RizviiD· 2 shared Aakash M. PateliD· 1 shared Albert Higgins‐CheniD· 1 shared Brian P. HafleriD· 1 shared Bryan PerozziiD· 1 shared Cerise Tang· 1 shared Chang LiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

David van DijkORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 3, 2026

CpG Atlas: A centralized multi-layer database and AI interface for DNA methylation research

Judith Armstrong, Shawn Wahi, Daniel S. Borrus…·Albert Higgins‐Chen

CpG Atlas integrates over 1.2 million CpG sites across multiple methylation arrays with 18 annotation layers and provides a query interface for epigenetic research.

1 citation

DNA methylationstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 14, 2025

Scaling Large Language Models for Next-Generation Single-Cell Analysis

Syed Asad Rizvi, Daniel Levine, Aakash M. Patel…·David van Dijk

This paper scales large language models for single-cell analysis, improving predictive and generative capabilities and enabling biological discovery through virtual screening.

39 citations

humanscRNA-seq

𝕏 PostBluesky