Author

John W. Wiley

University of MichiganORCID 0000-0001-9602-5146Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:imaging· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alexandr A. KalininiD· 3 shared Gen ZhengiD· 3 shared Ivo D. DinoviD· 3 shared Walter MeixneriD· 3 shared Alex S. Ade· 2 shared Amy L. CreekmoreiD· 2 shared Ari Allyn-Feuer· 2 shared Brian D. AtheyiD· 2 shared

Activity by Year

2018-2018 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Alexandr A. KalininORCID

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3 papers

Recent·Most cited

BioinformaticsScientific ReportsPeer-reviewedSep 6, 2018

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification

Alexandr A. Kalinin, Ari Allyn-Feuer, Alex S. Ade…·Ivo D. Dinov

The paper develops a 3D morphometric analysis pipeline for cell nuclei and nucleoli, achieving high classification accuracy in prostate cancer and fibroblast cells.

32 citations

humanimaging

BioinformaticsIEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)Peer-reviewedJun 1, 2018

3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results

Alexandr A. Kalinin, Ari Allyn-Feuer, Alex S. Ade…·Ivo D. Dinov

The paper introduces a 3D cell nuclear morphology dataset and evaluates classification algorithms using voxel-based morphometric measures.

23 citationstop 1%

imagingstatistical model

BioinformaticsbioRxivPreprintFeb 26, 2018

Rotational 3D mechanogenomic Turing patterns of human colon Caco-2 cells during differentiation

Gen Zheng, Alexandr A. Kalinin, Ivo D. Dinov…·John W. Wiley

The paper observes rotational 3D mechanogenomic Turing patterns in Caco-2 cells during differentiation, suggesting a link between actomyosin dynamics and gene morphogen-driven morphogenesis.

3 citations

humanbulk RNA-seq