Author

Alex S. Ade

University of Michigan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:imaging· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Alexandr A. KalininiD· 3 shared Brian D. AtheyiD· 3 shared Gerald A. HigginsiD· 3 shared Gordon-Victor Fon· 3 shared Ivo D. DinoviD· 3 shared Walter MeixneriD· 3 shared Amy L. CreekmoreiD· 2 shared Ari Allyn-Feuer· 2 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Alexandr A. KalininORCID

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Author profile →

3 papers

Recent·Most cited

Valproic Acid-Induced Changes of 4D Nuclear Morphology in Astrocyte Cells

Alexandr A. Kalinin, Xinhai Hou, Alex S. Ade, Gordon-Victor Fon, Walter Meixner, Gerald A. Higgins, Jonathan Z. Sexton, Xiang Wan, Ivo D. Dinov, Matthew J. O’Meara, Brian D. Athey

This study quantifies 4D nuclear morphology changes in human astrocytes treated with valproic acid, showing significant size and shape differences by day 7.

Molecular Biology of the Cell · Apr 28, 2021Peer-reviewedBioinformatics

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification

Alexandr A. Kalinin, Ari Allyn-Feuer, Alex S. Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Syed S. Husain, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy L. Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, , Ivo D. Dinov

The paper develops a 3D morphometric analysis pipeline for cell nuclei and nucleoli, achieving high classification accuracy in prostate cancer and fibroblast cells.

Scientific Reports · Sep 6, 2018Peer-reviewedBioinformatics

3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results

Alexandr A. Kalinin, Ari Allyn-Feuer, Alex S. Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy L. Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, , Ivo D. Dinov

The paper introduces a 3D cell nuclear morphology dataset and evaluates classification algorithms using voxel-based morphometric measures.

IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) · Jun 1, 2018Peer-reviewedBioinformatics