Walter Meixner

The paper develops an agent-based model of fibroblast scratch assays to simulate wound healing, achieving high accuracy in predicting cell behavior across different geometries.

The paper develops a single-cell transcriptomic reference atlas and evaluates a transcription factor recipe for reprogramming fibroblasts into hematopoietic stem cells, revealing intermediate transcriptomic states and transcriptional remodeling.

The paper maps multi-way chromatin contacts using long reads and identifies cell type-specific transcription clusters by integrating contacts with chromatin accessibility and gene expression.

This study shows that WAPL regulates T cell 3D genome structure, affecting activation, proliferation, and GVHD severity.

This study quantifies 4D nuclear morphology changes in human astrocytes treated with valproic acid, showing significant size and shape differences by day 7.

The paper develops a 3D morphometric analysis pipeline for cell nuclei and nucleoli, achieving high classification accuracy in prostate cancer and fibroblast cells.

The paper introduces a 3D cell nuclear morphology dataset and evaluates classification algorithms using voxel-based morphometric measures.

The paper observes rotational 3D mechanogenomic Turing patterns in Caco-2 cells during differentiation, suggesting a link between actomyosin dynamics and gene morphogen-driven morphogenesis.

This study shows that MYOD1-mediated reprogramming of human fibroblasts into muscle cells involves a genome architecture bifurcation point preceding transcriptional changes.