Author

Ignasius Joanito

Agency for Science, Technology and ResearchORCID 0000-0001-9623-4706Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:clustering· 2 Organism:human· 2 Assay:scRNA-seq· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Bobby RanjaniD· 2 shared Florian SchmidtiD· 2 shared Mohammad Amin Honardoost· 2 shared Nirmala Arul Rayan· 2 shared Shyam PrabhakariD· 2 shared Chao‐Ping HsuiD· 1 shared Ching‐Cher Sanders YaniD· 1 shared Ee Tzun KohiD· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Bobby RanjanORCID

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3 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedOct 6, 2021

DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data

Bobby Ranjan, Wenjie Sun, Jinyu Park…·Shyam Prabhakar

DUBStepR improves single-cell clustering by selecting features using gene-gene correlations and a Density Index, outperforming existing methods and detecting rare cell populations.

82 citationstop 4%

humanscRNA-seq

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BioinformaticsbioRxivPreprintFeb 16, 2021

Robust clustering and interpretation ofscRNA-seq data using reference componentanalysis

Florian Schmidt, Bobby Ranjan, Quy Xiao Xuan Lin…·Shyam Prabhakar

The paper introduces RCA2, a supervised clustering method for scRNA-seq data that is robust to batch effects and supports large-scale analysis.

2 citations

humanmouse

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Systems BiologyPLoS Computational BiologyPeer-reviewedSep 3, 2020

Basal leakage in oscillation: coupled transcriptional and translational control using feed-forward loops

Ignasius Joanito, Ching‐Cher Sanders Yan, Jhih‐Wei Chu…·Chao‐Ping Hsu

This study uses mathematical models to show that coupling transcriptional and post-translational controls via feed-forward loops improves circadian oscillator robustness against basal leakage.

3 citations

Arabidopsisstatistical model

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