Author

Diya Das

University of California, BerkeleyORCID 0000-0001-9646-8983Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:non-human primate· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Davide RissoiD· 3 shared Elizabeth A. PurdomiD· 3 shared John NgaiiD· 3 shared Russell B. FletcheriD· 3 shared Sandrine DudoitiD· 3 shared Kelly StreetiD· 2 shared Boying GongiD· 1 shared Bradley J. GoldsteiniD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Davide RissoORCID

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Author profile →

3 papers

Recent·Most cited

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

David H. Brann, Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Koen Van den Berge, Boying Gong, Rebecca K. Chance, Iain C. Macaulay, Hsin-Jung Chou, Russell B. Fletcher, Diya Das, Kelly Street, Hector Roux de Bézieux, Yoon-Gi Choi, Davide Risso, , Sandeep Robert Datta

The paper identifies non-neuronal cell types in the olfactory system expressing SARS-CoV-2 entry genes, suggesting indirect mechanisms for COVID-19-associated anosmia.

Science Advances · Jul 24, 2020Peer-reviewedNeuroscience

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth A. Purdom

The paper introduces clusterExperiment, a Bioconductor package for clustering large gene expression datasets using Resampling-based Sequential Ensemble Clustering (RSEC) to identify biologically meaningful subtypes.

PLoS Computational Biology · Sep 4, 2018Peer-reviewedBioinformatics

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth A. Purdom, Sandrine Dudoit

Slingshot builds a cluster-level minimum spanning tree to find branching lineages without fixing their number, then fits simultaneous principal curves for stable per-lineage pseudotimes.

BMC Genomics · Jun 18, 2018Peer-reviewedBioinformatics✦ In-depth digest