Tao Zhu

This study investigates how integrating the DD genome into tetraploid wheat enhances its adaptability by altering gene transcription, chromatin structure, and metabolome.

GAMETE maps chromatin accessibility genetic architecture in rice pollen using single-nucleus ATAC-seq and genotype inference, revealing cell-type-specific caQTLs and chromatin dynamics.

The paper maps rice chromatin accessibility across 23 tissues, identifies regulatory elements, and uses deep learning to model regulatory dynamics, revealing new functions and insights into complex trait regulation.

cisDynet is a platform for analyzing chromatin accessibility data, integrating preprocessing, downstream analysis, and visualization to uncover gene regulatory networks and GWAS variant associations.

This study creates a single-cell regulomic and transcriptomic map of cynomolgus monkeys, revealing cell-type similarities to humans over mice.

This paper introduces UMI-ATAC-seq to improve ATAC-seq quantification and footprinting by using unique molecular identifiers to reduce PCR duplicate bias.