Author

Yanyan Liu

Huazhong Agricultural University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Immunology· 2 Bioengineering· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1

Frequent Co-Authors

Arnon AraziiD· 2 shared Jennifer H. AnolikiD· 2 shared Michael B. BrenneriD· 2 shared Nir HacoheniD· 2 shared Aaron Wise· 1 shared Accelerating Medicines Partnership: RA/SLE Network· 1 shared Adam Chicoine· 1 shared Adam T. Chicoine· 1 shared

Activity by Year

2018-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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2 shared papersImmunology

Arnon AraziORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Integration of the DD-genome reshapes gene transcription, chromatin architecture and metabolome of allohexaploid wheat leading to enhanced adaptability

Yanyan Liu, Tao Zhu, Ziru Zhou, Wei Chen, Chao He, Xinkai Zhou, Xin Wang, Chuanye Chen, Bo Yang, Jiaqi Wei, Caixia Lan, Mengmeng Liu, Handong Su, Qiang Li, Xin Hu, , Wenhao Yan

This study investigates how integrating the DD genome into tetraploid wheat enhances its adaptability by altering gene transcription, chromatin structure, and metabolome.

Advanced Science · Sep 27, 2026Peer-reviewedPlant Biology

SPP1hi macrophages in fibrin niches promote hyperplastic tissue remodeling in rheumatoid arthritis synovium

Ian Mantel, Haoxuan Zhang, Juan Vargas, Ce Gao, Hope A. Townsend, Richard D. Bell, Amit Lakhanpal, Miriam R. Fein, Accelerating Medicines Partnership: RA/SLE Network, Thomas M. Norman, Dana E. Orange, Daniel C. Ramirez, Edward F. DiCarlo, Susan M. Goodman, Melanie H. Smith, , Thomas Eisenhaure

SPP1hi macrophages in RA synovial fibrin deposits promote tissue hyperplasia.

Science Translational Medicine · Jun 24, 2026Peer-reviewedImmunology

Automated high-throughput fabrication of patient-specific vessel-on-chips enables a generative AI digital twin--Cascade Learner of Thrombosis (CLoT) for personalized thrombosis prediction

Zihao Wang, Yunduo Charles Zhao, Haimei Zhao, Arian Nasser, Nicole Alexis Yap, Yanyan Liu, Allan Sun, Wei Chen, Ken S. Butcher, Timothy Ang, Lining Arnold Ju

The paper develops a platform for automated vessel-on-chip fabrication and a generative AI model, CLoT, to predict thrombosis in patients with high accuracy.

bioRxiv · Mar 5, 2026 · PreprintBioengineering

A protocol for single-cell transcriptomics from cryopreserved renal tissue and urine for the Accelerating Medicine Partnership (AMP) RA/SLE network

Deepak A. Rao, Celine C. Berthier, Arnon Arazi, Anne Davidson, Yanyan Liu, Edward P. Browne, Thomas M. Eisenhaure, Adam Chicoine, David J. Lieb, Dawn E. Smilek, Patti Tosta, James A. Lederer, Michael B. Brenner, David Hildeman, E. Steve Woodle, , Betty Diamond

This paper establishes a protocol for preserving and analyzing single-cell transcriptomes from cryopreserved renal tissue and urine samples in lupus nephritis studies.

bioRxiv · Mar 5, 2018 · PreprintImmunology