Author

Pariksheet Nanda

University of ConnecticutORCID 0000-0001-9726-4552Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:simulation· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:non-human primate· 1

Frequent Co-Authors

Christian T. MichaeliD· 2 shared Denise E. KirschneriD· 2 shared Alea C. DelmastroiD· 1 shared Chris Kuhlberg· 1 shared Erin McCaffreyiD· 1 shared Gabrielle MichaeliD· 1 shared Geno J. VillafanoiD· 1 shared JoAnne L. FlynniD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersSystems Biology

Christian T. MichaelORCID

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3 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 12, 2026

A tissue time machine to forward-predict single-timepoint data applied to tuberculosis granulomas

Pariksheet Nanda, Erin McCaffrey, Christian T. Michael…·Denise E. Kirschner

The paper introduces a method to predict longitudinal outcomes from single-timepoint data using a virtual library of granulomas, applied to tuberculosis in non-human primates.

DOI 10.64898/2026.10.09.758083

non-human primatespatial transcriptomics

𝕏 PostBluesky

Systems BiologyModeling and simulation in science, engineering & technologyPeer-reviewedJan 1, 2024

Development and Analysis of Multiscale Models for Tuberculosis: From Molecules to Populations

Pariksheet Nanda, Maral Budak, Christian T. Michael…·Denise E. Kirschner

The paper reviews multiscale modeling approaches for infectious diseases and introduces two tools for calibrating and resolving multiscale models, using tuberculosis as an example.

13 citationstop 1%

statistical modelsimulation

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GenomicsbioRxivPreprintJun 22, 2021

Multiple modes of regulation control dynamic transcription patterns during the mitosis-G1 transition

Luke Wojenski, Lauren M. Wainman, Geno J. Villafano…·Leighton J. Core

The paper identifies multiple regulatory mechanisms that control transcription reactivation during the mitosis-G1 transition using PRO-seq.

DOI 10.1101/2021.06.22.449286

ChIP-seqexperimental assay

𝕏 PostBluesky