Ken Youens‐Clark

The paper identifies 1296 human genes with dual-coding regions (DCRs) and shows their conservation in mice, tissue-specific expression, and functional implications in gene regulation.

NEAR improves homology detection speed and accuracy by using neural embeddings trained with contrastive learning, outperforming existing methods as a pre-filter for protein sequence annotation.

The paper shows that secondary metabolism gene clusters in Xylariales fungi are linked to broader ecological roles and increased gene diversity.

PuMA annotates papillomavirus genomes with 98% accuracy and was used to annotate 1424 features from 168 new isolates.

This paper evaluates Centrifuge's performance in detecting clinically relevant microbes in whole blood, showing high sensitivity and efficiency with reduced computational needs.