Alise Jany Ponsero

This study examines how soil viral communities respond to drought and recovery in an artificial rainforest, finding they are more influenced by soil heterogeneity than moisture changes.

The paper introduces PHORAGER, a pipeline for identifying prophages in bacterial genomes, and reports the discovery of 23,132 putative prophages in ESKAPE pathogens.

This study uses shotgun metagenomics to show that the gut microbiome of insectivorous bats remains stable during temporary managed care, with minimal changes in microbial composition.

The paper compares INPHARED database snapshots from 2021 to 2026, showing growth in phage genomes but reduced novel species diversity and persistent host bias.

This study benchmarks five ARG detection tools on simulated metagenomic datasets, showing coverage and community complexity impact accuracy, with ARGprofiler leading in F1-score and computational efficiency.

The paper analyzes infant gut microbiota in multi-child families and finds that sibling presence accelerates microbiota maturation but does not create a sibling-specific signature.

The paper examines bacteriophage diversity in COPD patients and finds it declines with disease severity, showing disrupted viral-bacterial relationships in those with frequent exacerbations.

This study compares bacterial and viral community structure and function in urban greenspaces and natural arid soils using metagenomic data, finding distinct differences in genetic potential for metabolism and resistance.

The paper analyzes the dairy cow gut virome across life stages, finding distinct viral communities and identifying phages targeting methanogens.

The paper aggregates nine existing human gut viral catalogues and expands them with new data to create AVrC, a unified resource containing over a million viral sequences.

This paper evaluates Centrifuge's performance in detecting clinically relevant microbes in whole blood, showing high sensitivity and efficiency with reduced computational needs.