Author

Joanne K. Liu

University of California San DiegoORCID 0000-0001-9973-524XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alexander T. WenzeliD· 1 shared Ali EbrahimiD· 1 shared Anne RichelleiD· 1 shared Austin W.T. ChiangiD· 1 shared Benjamin P. KellmaniD· 1 shared Bernhard Ørn PalssoniD· 1 shared Chintan Jagdishchandra JoshiiD· 1 shared Christophe TrefoisiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperSystems Biology

Alexander T. WenzelORCID

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2 papers

Recent·Most cited

Systems BiologyCell Reports MethodsPeer-reviewedJun 30, 2021

What does your cell really do? Model-based assessment of mammalian cells metabolic functionalities using omics data

Anne Richelle, Benjamin P. Kellman, Alexander T. Wenzel…·Nathan E. Lewis

The paper introduces a framework to predict how changes in omics data affect metabolic functions in mammalian cells using curated metabolic tasks and genome-scale networks.

47 citations

humanmouse

𝕏 PostBluesky

Systems BiologyPLoS Computational BiologyPeer-reviewedJul 5, 2018

COBRAme: A Computational Framework for Models of Metabolism and Gene Expression

Colton J. Lloyd, Ali Ebrahim, Laurence Yang…·Bernhard Ørn Palsson

COBRAme is a software framework for building and simulating ME-models, enabling efficient reconstruction and analysis of genome-scale models of metabolism and gene expression.

167 citationstop 2%

E. colimetabolomics

𝕏 PostBluesky