Author

Ying-Yuan Xie

Sun Yat-sen UniversityORCID 0000-0002-0038-2147Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:long-read sequencing· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Guan‐Zheng LuoiD· 2 shared Zhang ZhangiD· 2 shared Zhen-Dong ZhongiD· 2 shared Zhi-Shuo Qiao· 2 shared Chen‐Long Wang· 1 shared Fu Wu· 1 shared Guo‐Run TangiD· 1 shared Hong-Xuan CheniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Guan‐Zheng LuoORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

OpenBase: a universal framework for high-accuracy single-molecule detection of diverse non-canonical DNA bases using nanopore sequencing

Zhen-Dong Zhong, Ying-Yuan Xie, Rujia Luo, Hongxuan Chen, Zhi-Shuo Qiao, Zehui Ren, Zhang Zhang, Guan‐Zheng Luo

OpenBase provides a framework for high-accuracy detection of diverse non-canonical DNA bases using nanopore sequencing through standardized training data and deep learning models.

bioRxiv · May 16, 2026 · PreprintBioinformatics

Deciphering the epitranscriptomic code of RNA degradation with nanopore direct RNA sequencing

Zhang Zhang, Chen‐Long Wang, Zhihao Zhang, Yifeng Huang, Ying-Yuan Xie, Zhen-Dong Zhong, Guo‐Run Tang, Ze-Hui Ren, Ye-Lin Lan, Jin‐Wen Kong, Zhi-Shuo Qiao, Tao-Wen Su, Hong-Xuan Chen, Q Wang, Ru‐Jia Luo, , Guan‐Zheng Luo

This study uses nanopore direct RNA sequencing to analyze how m6A modifications and poly(A) tail dynamics influence RNA degradation kinetics and isoform-specific decay.

bioRxiv · May 10, 2026 · PreprintBioinformatics