Author

Elizabeth E. McCarthy

University of California, San FranciscoORCID 0000-0002-0073-4069Unclaimed ORCID profile · follow to get notified of new preprints

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Elizabeth E. McCarthy1 paper

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander MarsoniD· 1 shared Chun YeiD· 1 shared Cristina M. LanataiD· 1 shared Eunice Wan· 1 shared Hyun Min KangiD· 1 shared Lauren E. ByrnesiD· 1 shared Lenka MaliskovaiD· 1 shared Lindsey A. CriswelliD· 1 shared

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2017-2017 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Alexander MarsonORCID

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1 paper

Recent·Most cited

Multiplexing droplet-based single cell RNA-sequencing using natural genetic barcodes

Hyun Min Kang, Meena Subramaniam, Sasha Targ, Michelle Ly Thai Nguyen, Lenka Maliskova, Elizabeth E. McCarthy, Eunice Wan, Simon Wong, Lauren E. Byrnes, Cristina M. Lanata, Rachel E. Gate, Sara Mostafavi, Alexander Marson, Noah Zaitlen, Lindsey A. Criswell, Chun Ye

The paper introduces demuxlet, an algorithm that uses natural genetic variation to multiplex single-cell RNA-seq samples, enabling accurate sample identification and doublet detection in pooled experiments.

Nature Biotechnology · Dec 11, 2017Peer-reviewedBioinformatics