Author

Eunice Wan

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2 Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Approach:statistical model· 4 Research Focus:differential expression· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:drug response / drug discovery· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Simon Wong· 2 shared Aleksandar RajkoviciD· 1 shared Aleta Pollard· 1 shared Alexander MarsoniD· 1 shared Aparna Sashikanth· 1 shared Bani TamraziD· 1 shared Benjamin Tsai· 1 shared Caroline Gar-Ling TaiiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Simon Wong

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

CLINICAL IMPLEMENTATION OF PREEMPTIVE PHARMACOGENOMICS TESTING FOR PERSONALIZED MEDICINE AT AN ACADEMIC MEDICAL CENTER

Bani Tamraz, Jaekyu Shin, Raman Ravi Khanna, Jessica Van Ziffle, Susan Knowles, Susan Stregowski, Eunice Wan, Rajesh Kamath, Christopher Collins, Choeying Phunsur, Benjamin Tsai, Patsy Kong, Clari Calanoc, Aleta Pollard, Rajeev Sawhney, , Aleksandar Rajkovic

This paper describes the implementation of preemptive pharmacogenomics testing linked to an electronic clinical decision support system at UCSF Health to guide medication decisions.

Journal of the American Medical Informatics Association · Nov 12, 2024Peer-reviewedGenetic & Genomic Medicine

Host Variation in Type I Interferon Signaling Genes (MX1), CCR5{triangleup}32, and MHC Class I Alleles in Treated HIV+ Non-Controllers Predict Viral Reservoir Size

David A. Siegel, Cassandra Thanh, Eunice Wan, Rebecca Hoh, Kristen S. Hobbs, Tony Pan, Erica A. Gibson, Deanna L. Kroetz, Peter W. Hunt, Jeffrey N. Martin, Frederick M. Hecht, Christopher D. Pilcher, Jeffrey M. Milush, Maureen P. Martin, Mary N Carrington, , Sulggi A. Lee

The paper investigates host genetic variations in MX1, CCR5Δ32, and MHC class I alleles in HIV+ non-controllers on ART and finds associations with HIV reservoir size.

bioRxiv · Oct 31, 2021 · PreprintGenomics

Association Study of Over 200,000 Subjects Detects Novel Rare Variants, Functional Elements, and Polygenic Architecture of Prostate Cancer Susceptibility

Nima C. Emami, Taylor B. Cavazos, Sara R. Rashkin, Clinton L. Cario, Rebecca E. Graff, Caroline Gar-Ling Tai, Joel Mefford, Linda Kachuri, Eunice Wan, Simon Wong, David S. Aaronson, Joseph C. Presti, Laurel A. Habel, Jun Shan, Dilrini K. Ranatunga, , John S. Witte

This study identifies six novel genetic loci, including two rare variants, and shows that a polygenic risk score strongly predicts prostate cancer risk.

Cancer Research · Dec 8, 2020Peer-reviewedGenomics

Multiplexing droplet-based single cell RNA-sequencing using natural genetic barcodes

Hyun Min Kang, Meena Subramaniam, Sasha Targ, Michelle Ly Thai Nguyen, Lenka Maliskova, Elizabeth E. McCarthy, Eunice Wan, Simon Wong, Lauren E. Byrnes, Cristina M. Lanata, Rachel E. Gate, Sara Mostafavi, Alexander Marson, Noah Zaitlen, Lindsey A. Criswell, Chun Ye

The paper introduces demuxlet, an algorithm that uses natural genetic variation to multiplex single-cell RNA-seq samples, enabling accurate sample identification and doublet detection in pooled experiments.

Nature Biotechnology · Dec 11, 2017Peer-reviewedBioinformatics