Author

Michelle Ly Thai Nguyen

University of California, San FranciscoORCID 0009-0007-2594-4904Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 4 Organism:human· 4 Assay:bulk RNA-seq· 2 Assay:CRISPR screen· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Alexander MarsoniD· 4 shared Benjamin G. GoweniD· 2 shared Chun YeiD· 2 shared Dimitre R. SimeonoviD· 2 shared Jacob E. CorniD· 2 shared Lindsey A. CriswelliD· 2 shared Mark Stuart AndersoniD· 2 shared Meena SubramaniamiD· 2 shared

Activity by Year

2016-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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4 shared papersGenomics

Alexander MarsonORCID

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4 papers

Recent·Most cited

GenomicsNature GeneticsPeer-reviewedSep 30, 2019

Landscape of stimulation-responsive chromatin across diverse human immune cells

Diego Calderon, Michelle Ly Thai Nguyen, Anja Mezger…·Jonathan K. Pritchard

The paper maps stimulation-responsive chromatin changes in immune cells and identifies variants linked to autoimmunity.

282 citationstop 1%

𝕏 PostBluesky

BioinformaticsNature BiotechnologyPeer-reviewedDec 11, 2017

Multiplexing droplet-based single cell RNA-sequencing using natural genetic barcodes

Hyun Min Kang, Meena Subramaniam, Sasha Targ…·Chun Ye

The paper introduces demuxlet, an algorithm that uses natural genetic variation to multiplex single-cell RNA-seq samples, enabling accurate sample identification and doublet detection in pooled experiments.

1,146 citationstop 1%

humanbulk RNA-seq

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GenomicsNature GeneticsPeer-reviewedSep 25, 2017

Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements

Maxwell R. Mumbach, Ansuman T. Satpathy, Evan A. Boyle…·Howard Y. Chang

This paper uses HiChIP to map enhancer-promoter interactions in primary human cells, linking disease-associated DNA variants to their target genes.

489 citationstop 1%

𝕏 PostBluesky

GeneticsbioRxivPreprintDec 5, 2016

Discovery of an autoimmunity-associated IL2RA enhancer by unbiased targeting of transcriptional activation

Dimitre R. Simeonov, Benjamin G. Gowen, Mandy Y. Boontanrart…·Alexander Marson

The paper identifies an IL2RA enhancer associated with autoimmunity using CRISPRa and shows it affects gene activation timing without blocking expression.

4 citations

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