Author

Sergei A. Filichkin

Oregon State UniversityORCID 0000-0002-0105-6431Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 1 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Maria G. Ivanchenko· 1 shared Mitra AnsariolaiD· 1 shared Molly S. MegrawiD· 1 shared Olivia R. OzguciD· 1 shared Russell A. GouldiD· 1 shared Shawn T. O’NeiliD· 1 shared Valerie N. FraseriD· 1 shared Zachary A. BrightiD· 1 shared

Activity by Year

2020-2020 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperGenomics

Maria G. Ivanchenko

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1 paper

Recent·Most cited

Accurate transcription start sites enable mining for the cis-regulatory determinants of tissue specific gene expression

Mitra Ansariola, Valerie N. Fraser, Sergei A. Filichkin, Maria G. Ivanchenko, Zachary A. Bright, Russell A. Gould, Olivia R. Ozguc, Shawn T. O’Neil, Molly S. Megraw

The paper identifies cis-regulatory determinants of tissue-specific gene expression in Arabidopsis thaliana by analyzing TSS-seq, OC-seq, and RNA-seq data, finding that TSS-proximal TF binding sites are more important than distal chromatin regions.

bioRxiv · Sep 1, 2020 · PreprintGenomics