Author

Renato R. M. Oliveira

Vale Technological InstituteORCID 0000-0002-0111-8209Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:genome assembly· 2 Research Focus:database / resource· 1 Assay:Hi-C· 1 Assay:metagenomics· 1 Organism:mouse· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexandre Luis Padovan AleixoiD· 2 shared Gisele Lopes NunesiD· 2 shared Guilherme OliveiraiD· 2 shared Lucas Eduardo Costa CanesiniD· 2 shared Amanda Ferreira VidaliD· 1 shared Amely Branquinho MartinsiD· 1 shared Ana Paula Cazerta FarroiD· 1 shared Bruno Marques SilvaiD· 1 shared

Activity by Year

2017-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Alexandre Luis Padovan AleixoORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 6, 2026

A chromosome-level genome of the franciscana dolphin, Pontoporia blainvillei

Lucas Eduardo Costa Canesin, Alexandre Luis Padovan Aleixo, Amanda Ferreira Vidal…·Sibelle Torres Vilaça

The paper presents the first chromosome-level genome assembly of the franciscana dolphin, enabling phylogenetic and conservation studies.

DOI 10.64898/2026.07.31.742074

mousewhole-genome sequencing

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BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2026

Pipeasm: a tool for automated large chromosome-scale genome assembly and evaluation

Bruno Marques Silva, Fernanda J. Trindade, Lucas Eduardo Costa Canesin…·Renato R. M. Oliveira

Pipeasm automates large chromosome-scale genome assembly using HiFi, ONT, and HiC data, enabling diploid genome assembly with a Snakemake pipeline.

2 citations

Hi-Cexperimental assay

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BioinformaticsLecture notes in computer sciencePeer-reviewedJan 1, 2021

PIMBA: a PIpeline for MetaBarcoding Analysis

Renato R. M. Oliveira, Raíssa Silva, Gisele L. Nunes, Guilherme Oliveira

PIMBA is a pipeline for DNA metabarcoding analysis that supports custom databases and integrates multiple reference databases into a user-friendly, open-source tool.

19 citationstop 4%

metagenomicsexperimental assay

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GenomicsbioRxivPreprintDec 4, 2017

Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda), a troglobitic species from Carajas iron-ore caves (Para, Brazil)

Gisele Lopes Nunes, Renato R. M. Oliveira, Eder S. Pires…·Guilherme Oliveira

The paper reports the complete mitochondrial genome of Glomeridesmus spelaeus, a troglobitic species, and highlights its distinct genetic relationship to other Diplopoda species.

1 citation

experimental assay

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