Author

Bruno Marques Silva

Universidade Federal de Minas GeraisORCID 0000-0002-1311-9823Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:genome assembly· 1 Approach:graph neural network· 1 Assay:Hi-C· 1 Approach:machine learning (classical)· 1 Assay:protein structure· 1

Frequent Co-Authors

Alexandre Luis Padovan AleixoiD· 1 shared Bruno de Paula Oliveira SantosiD· 1 shared Douglas V. Pires· 1 shared Fernanda J. TrindadeiD· 1 shared Giordano SouzaiD· 1 shared Gisele Lopes NunesiD· 1 shared Gustavo de Oliveira AlmeidaiD· 1 shared Lucas Eduardo Costa CanesiniD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBioinformatics

Alexandre Luis Padovan AleixoORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 15, 2026

NoiTox: A Machine Learning Strategy for Peptide Toxicity Prediction Reveals Label Noise in Benchmark Datasets

Gustavo de Oliveira Almeida, Matheus C. Albuquerque, Bruno Marques Silva…·Sabrina de Azevedo Silveira

NoiTox presents a multi-model approach for peptide toxicity prediction, revealing label noise in datasets and showing that physicochemical descriptors are informative.

DOI 10.64898/2026.10.08.757741

proteomicsmachine learning (classical)

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BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2026

Pipeasm: a tool for automated large chromosome-scale genome assembly and evaluation

Bruno Marques Silva, Fernanda J. Trindade, Lucas Eduardo Costa Canesin…·Renato R. M. Oliveira

Pipeasm automates large chromosome-scale genome assembly using HiFi, ONT, and HiC data, enabling diploid genome assembly with a Snakemake pipeline.

2 citations

Hi-Cexperimental assay

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BioinformaticsbioRxivPreprintDec 8, 2020

Workflow for Protein N-terminal Acetylation and C-terminal Amidation Application using CcpNmr Analysis v2.4 Platform and Aria2.3 Structure Calculation Software

Bruno de Paula Oliveira Santos, Bruno Marques Silva, Mariana T. Q. de Magalhães

The paper presents a workflow combining CCPNMR2.4 and ARIA2.3 to handle N-terminal acetylation and C-terminal amidation in protein structure calculation, showing no significant difference from existing methods.

DOI 10.1101/2020.12.08.414565

protein structureexperimental assay

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