Alexandre Luis Padovan Aleixo

The paper presents the first chromosome-level genome assembly of the franciscana dolphin, enabling phylogenetic and conservation studies.

This study links habitat specialization to genetic structure, divergence, and demographic variation in Amazonian floodplain birds using population genomic data.

The Vertebrate Genomes Project Phase I provides high-quality reference genomes for 816 species, enabling evolutionary and conservation insights across vertebrates.

Pipeasm automates large chromosome-scale genome assembly using HiFi, ONT, and HiC data, enabling diploid genome assembly with a Snakemake pipeline.

The paper quantifies introgression in tinamou species, showing asymmetric patterns linked to chromosomal features and resolving their species tree through genome-architecture-aware phylogenomics.

The paper uses whole-genome data from tinamous to reconstruct their phylogeny, estimate divergence times, and assess the impact of incomplete lineage sorting and introgression on genome evolution.

This study examines geographical variation in the mitogenomes of largetooth sawfish and develops a new species-specific probe set to improve detection for conservation.

The paper shows genomic architecture influences spatial structuring in Amazonian birds by showing genetic diversity and gene flow vary with recombination rates and selection.