Author

Daniel Zilberman

John Innes CentreORCID 0000-0002-0123-8649Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 4 Assay:DNA methylation· 4 Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

David B. LyonsiD· 4 shared Jaemyung ChoiiD· 3 shared Amy BriffaiD· 2 shared Elizabeth HollweyiD· 2 shared Jonathan D. MooreiD· 2 shared Martin HowardiD· 2 shared Ian Anderson· 1 shared Jack M. ColicchioiD· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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4 shared papersGenetics

David B. LyonsORCID

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4 papers

Recent·Most cited

Unified establishment and epigenetic inheritance of DNA methylation through cooperative MET1 activity

Amy Briffa, Elizabeth Hollwey, Zaigham Shahzad, Jonathan D. Moore, David B. Lyons, Martin Howard, Daniel Zilberman

The paper develops a mathematical model to explain how DNA methylation patterns are established and inherited in Arabidopsis thaliana genes, showing they undergo long-term epigenetic fluctuations.

Cell Systems · Nov 1, 2023Peer-reviewedGenetics

Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons

David B. Lyons, Amy Briffa, Shengbo He, Jaemyung Choi, Elizabeth Hollwey, Jack M. Colicchio, Ian Anderson, Xiaoqi Feng, Martin Howard, Daniel Zilberman

The paper shows that de novo methylation stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons, counteracting maintenance failure.

Cell Reports · Feb 22, 2023Peer-reviewedGenetics

Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin

Jaemyung Choi, David B. Lyons, Daniel Zilberman

The paper shows that histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin by excluding RdDM from non-CG methylated regions.

eLife · Dec 1, 2021Peer-reviewedGenomics

DNA methylation and histone H1 cooperatively repress transposable elements and aberrant intragenic transcripts

Jaemyung Choi, David B. Lyons, M. Yvonne Kim, Jonathan D. Moore, Daniel Zilberman

The paper shows that DNA methylation and histone H1 work together to silence transposable elements and aberrant intragenic transcripts in Arabidopsis thaliana.

Molecular Cell · Nov 12, 2019Peer-reviewedGenetics