Author

Amélie Collins

Columbia UniversityORCID 0000-0002-0206-1996Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Emmanuelle A. PassegueiD· 2 shared James W. SwanniD· 2 shared Melissa A. ProveniD· 2 shared Carl A. MitchelliD· 1 shared Chandani M. PateliD· 1 shared Jun Hou FungiD· 1 shared Monica KasbekariD· 1 shared Oakley C. OlsoniD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersCell Biology

Emmanuelle A. PassegueORCID

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2 papers

Recent·Most cited

Cell BiologyCell stem cellPeer-reviewedJun 18, 2026

Quantitative molecular cartography of emergency myelopoiesis reveals conserved modules of hematopoietic activation

James W. Swann, Jun Hou Fung, Ziwei Chen…·Emmanuelle A. Passegue

The paper identifies shared and distinct molecular mechanisms of emergency myelopoiesis using scRNA-seq and develops tools to annotate and model hematopoietic differentiation.

DOI 10.1016/j.stem.2026.05.007

humanscRNA-seq

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Developmental BiologybioRxivPreprintSep 13, 2023

Maternal IL-10 restricts fetal emergency myelopoiesis

Amélie Collins, James W. Swann, Melissa A. Proven…·Emmanuelle A. Passegue

The paper shows maternal IL-10 restricts fetal HSPCs from activating emergency myelopoiesis, leading to reduced myeloid cell production and neonatal neutropenia.

DOI 10.1101/2023.09.13.557548

mousebulk RNA-seq

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