Author

Seema Nagpal

Stanford MedicineORCID 0000-0002-0289-2319Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:protein structure prediction· 2 Research Focus:drug response / drug discovery· 1 Approach:statistical model· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Melanie Hayden GephartiD· 2 shared Bina Wasunga KakusaiD· 1 shared Boxiang LiuiD· 1 shared Bryana Godfrey· 1 shared Cécile Riviere-CazauxiD· 1 shared Charlotte WeixeliD· 1 shared Daniel B. HerrickiD· 1 shared Ece Dilber Gamsiz UzuniD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersCancer Biology

Melanie Hayden GephartORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintMay 26, 2026

CSF-Seq enables transcriptome-wide profiling of cerebrospinal fluid and identifies prognostic signature of leptomeningeal disease

Maxine C. Umeh-Garcia, Giuseppe Barisano, Pablo Nunez Perez…·Melanie Hayden Gephart

CSF-Seq profiles cerebrospinal fluid transcriptomes to identify a prognostic gene signature for leptomeningeal disease.

DOI 10.64898/2026.05.21.725787

humanbulk RNA-seq

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BioinformaticsCommunications MedicinePeer-reviewedAug 19, 2025

LUNAR: A Deep Learning Model to Predict Glioma Recurrence Using Integrated Genomic and Clinical Data

Jessica Patricoski, Seema Nagpal, Ritambhara Singh…·Ece Dilber Gamsiz Uzun

LUNAR predicts glioma recurrence by integrating clinical, genomic, and mRNA expression data from grade II-IV glioma patients.

12 citationstop 2%

humanbulk RNA-seq

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GenomicsJournal of Thoracic OncologyPeer-reviewedMar 28, 2018

Recurrently Mutated Genes Differ between Leptomeningeal and Solid Lung Cancer Brain Metastases

Yingmei Li, Boxiang Liu, Ian David Connolly…·Melanie Hayden Gephart

This study compares mutation frequencies between leptomeningeal and solid lung cancer brain metastases, finding higher EGFR mutations in leptomeningeal disease and no KRAS mutations.

33 citations

humanwhole-exome sequencing

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