Author

Jainy Thomas

University of UtahORCID 0000-0002-0356-4528Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Research Focus:benchmarking· 1

Frequent Co-Authors

Cédric FeschotteiD· 2 shared Julie Ellen FeusieriD· 2 shared Lynn B. JordeiD· 2 shared W. Scott WatkinsiD· 2 shared Andrew FarrelliD· 1 shared Clément GoubertiD· 1 shared David J. Witherspoon· 1 shared Hervé PerroniD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersBioinformatics

Cédric FeschotteORCID

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3 papers

Recent·Most cited

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data

Clément Goubert, Jainy Thomas, Lindsay M. Payer, Jeffrey M. Kidd, Julie Ellen Feusier, W. Scott Watkins, Kathleen H. Burns, Lynn B. Jorde, Cédric Feschotte

TypeTE improves Alu insertion genotype accuracy from 83% to 92% in the 1000 Genomes dataset by reassembling and re-mapping sequencing data.

Nucleic Acids Research · Feb 11, 2020Peer-reviewedBioinformatics

Pedigree-based estimation of human mobile element retrotransposition rates

Julie Ellen Feusier, W. Scott Watkins, Jainy Thomas, Andrew Farrell, David J. Witherspoon, Lisa Morrison Baird, Hongseok Ha, Jinchuan Xing, Lynn B. Jorde

The paper estimates human retrotransposition rates for L1, Alu, and SVA elements using WGS data from 33 three-generation pedigrees, finding rates and parent-of-origin effects.

Genome Research · Oct 1, 2019Peer-reviewedGenetics

Diverse endogenous retroviruses generate structural variation between human genomes via LTR recombination

Jainy Thomas, Hervé Perron, Cédric Feschotte

The paper identifies and validates structural variation in human genomes caused by LTR recombination of endogenous retroviruses, revealing previously unrecognized interindividual diversity.

bioRxiv · Aug 1, 2018 · PreprintGenetics