Author

Lindsay M. Payer

Johns Hopkins UniversityORCID 0000-0002-7015-8407Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Kathleen H. BurnsiD· 3 shared Cédric FeschotteiD· 1 shared Clarissa N. PacynaiD· 1 shared Clément GoubertiD· 1 shared Daniel ArdeljaniD· 1 shared Hannah J. Lords· 1 shared Jainy ThomasiD· 1 shared Jared P. SterankaiD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersBioinformatics

Kathleen H. BurnsORCID

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3 papers

Recent·Most cited

Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues

Xiaolong Cao, Yeting Zhang, Lindsay M. Payer, Hannah J. Lords, Jared P. Steranka, Kathleen H. Burns, Jinchuan Xing

The paper identifies polymorphic mobile element insertions (pMEIs) as contributors to gene expression and alternative splicing variations across 48 human tissues using GTEx data.

Genome biology · Jul 27, 2020Peer-reviewedGenomics

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data

Clément Goubert, Jainy Thomas, Lindsay M. Payer, Jeffrey M. Kidd, Julie Ellen Feusier, W. Scott Watkins, Kathleen H. Burns, Lynn B. Jorde, Cédric Feschotte

TypeTE improves Alu insertion genotype accuracy from 83% to 92% in the 1000 Genomes dataset by reassembling and re-mapping sequencing data.

Nucleic Acids Research · Feb 11, 2020Peer-reviewedBioinformatics

SQuIRE: Software for Quantifying Interspersed Repeat Elements

Wan Rou Yang, Daniel Ardeljan, Clarissa N. Pacyna, Lindsay M. Payer, Kathleen H. Burns

SQuIRE quantifies interspersed repeat elements in RNA-seq data by integrating alignment, annotation, and expression analysis tools.

bioRxiv · May 4, 2018 · PreprintBioinformatics