Julie Ellen Feusier

The paper analyzes mobile element insertions and structural variants in longitudinal breast cancer samples to assess their timing and impact on tumor progression.

The paper reports de novo structural mutation rates and gamete-of-origin biases using genome sequencing of 2,396 families, finding higher rates in autism cases and paternal origin dominance.

TypeTE improves Alu insertion genotype accuracy from 83% to 92% in the 1000 Genomes dataset by reassembling and re-mapping sequencing data.

The paper estimates human retrotransposition rates for L1, Alu, and SVA elements using WGS data from 33 three-generation pedigrees, finding rates and parent-of-origin effects.

The paper analyzes co-transcriptome networks between Arabidopsis and B. cinerea to uncover virulence mechanisms and cross-kingdom interactions during infection.

The paper resequences 97 Botrytis cinerea isolates to study natural variation, finds increased genetic diversity and mitochondrial diversity, and identifies candidate genes for broad host range.