Author

Joonas Sokka

University of HelsinkiORCID 0000-0002-0377-8841Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Developmental Biology· 1 Genetic & Genomic Medicine· 1 Genetics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Ras TrokoviciD· 3 shared Essi WalléniD· 2 shared Jussi VehvilaineniD· 2 shared K. RämöiD· 2 shared Nina Kaminen‐AholaiD· 2 shared Pauliina AuvineniD· 2 shared Timo OtonkoskiiD· 2 shared Álvaro Plaza ReyesiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenetics

Ras TrokovicORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GeneticsDisease Models & MechanismsPeer-reviewedMay 22, 2025

Effects of alcohol on the transcriptome, methylome, and metabolome of in vitro gastrulating human embryonic cells

Essi Wallén, K. Rämö, Jussi Vehvilainen…·Nina Kaminen‐Ahola

This study examines how alcohol exposure affects the transcriptome, methylome, and metabolome of human embryonic cells during gastrulation, identifying key gene and metabolic changes linked to fetal alcohol spectrum disorders.

8 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky

Developmental BiologyNature MethodsPeer-reviewedNov 14, 2024

A Comprehensive Human Embryogenesis Reference Tool using Single-Cell RNA-Sequencing Data

Cheng Zhao, Álvaro Plaza Reyes, John Paul Schell…·Fredrik Lanner

The paper develops a comprehensive reference tool for human embryogenesis using integrated single-cell RNA-sequencing data to benchmark embryo models.

177 citationstop 1%

humannon-human primate

𝕏 PostBluesky

Genetic & Genomic MedicineBMC MedicinePeer-reviewedDec 29, 2022

Chromatin remodeler developmental pluripotency associated factor 4 (DPPA4) is a candidate gene for alcohol-induced developmental disorders

Pauliina Auvinen, Jussi Vehvilainen, Heidi Marjonen…·Nina Kaminen‐Ahola

The paper investigates the effects of alcohol exposure on placental DNA methylation and identifies DPPA4 as a candidate gene for alcohol-induced developmental disorders.

20 citations

humanDNA methylation

𝕏 PostBluesky