Author

Berkay ENGİN

Boston UniversityORCID 0000-0002-0398-6843Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:proteomics· 1

Frequent Co-Authors

Benedetta D’Elia· 2 shared Juan I. Fuxman BassiD· 2 shared Luis F. Soto-Ugaldi· 2 shared Mohamed Yousry ElSadec· 2 shared Andrew J. HendersoniD· 1 shared Bethany Weinberg· 1 shared Ching‐Huang HoiD· 1 shared Clarissa Stephanie SantosoiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersMicrobiology

Benedetta D’Elia

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintAug 4, 2026

Peptide tiling across viral proteomes identifies modular regulators of stress-induced cell death

Jaice T. Rottenberg, Ezra Taub, Sean Cottrell…·Juan I. Fuxman Bass

The paper uses peptide tiling to identify viral protein regions that modulate stress-induced cell death in U2OS cells, revealing modular regulatory functions.

DOI 10.64898/2026.08.04.742754

humanproteomics

𝕏 PostBluesky

MicrobiologybioRxivPreprintApr 6, 2026

Atlas of HIV cis-regulatory elements reveals extensive transcriptional variation across clades, isolates, and within individuals

Berkay ENGİN, Mohamed Yousry ElSadec, Joseph Alexander Finkelberg…·Juan I. Fuxman Bass

The paper creates a regulatory atlas of HIV-1 and HIV-2 by analyzing transcriptional variation across clades, isolates, and individuals using MPRAs and predictive models.

DOI 10.64898/2026.04.03.716403

humanbulk RNA-seq

𝕏 PostBluesky