Author

Ruoyu Wang

Chinese Academy of SciencesORCID 0000-0002-0422-6408Unclaimed ORCID profile · follow to get notified of new preprints

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Ruoyu Wang3 papers · Chinese Academy of Sciences

Biology Disciplines

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Bioinformatics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Assay:metabolomics· 1 Approach:optimal transport· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Hongwu MaiD· 2 shared Zhitao MaoiD· 2 shared Chaoyou XueiD· 1 shared Haoran LiiD· 1 shared Jingyi CaiiD· 1 shared Jirun Guan· 1 shared Jun DuiD· 1 shared Peiji Zhang· 1 shared

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2021-2025 · peak 1/yr

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10 top collaborators · 29 mutual co-author links

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2 shared papersSynthetic Biology

Hongwu MaORCID

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2 papers

Recent·Most cited

Synthetic BiologybioRxivPreprintMar 23, 2025

SynBioGPT: A Retrieval-Augmented Large Language Model Platform for AI-Guided Microbial Strain Development

Zhitao Mao, Jun Du, Ruoyu Wang…·Hongwu Ma

SynBioGPT v2.0 improves synthetic biology strain design by using query decomposition and keyword-based retrieval to enhance accuracy over its previous version.

4 citations

large language modelsoftware / tool

𝕏 PostBluesky

BioinformaticsMetabolic EngineeringPeer-reviewedJun 24, 2021

Integrating thermodynamic and enzymatic constraints into genome-scale metabolic models

Xue Na Yang, Zhitao Mao, Xin Zhao…·Hongwu Ma

This paper introduces a method that integrates enzymatic and thermodynamic constraints into genome-scale metabolic models to improve pathway prediction accuracy.

43 citations

E. colimetabolomics

𝕏 PostBluesky