Author

Xue Na Yang

Chinese Academy of SciencesORCID 0000-0002-6595-6498Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:metabolomics· 2 Approach:statistical model· 2 Research Focus:variant effect prediction· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Approach:optimal transport· 1

Frequent Co-Authors

Hongwu MaiD· 2 shared Zhitao MaoiD· 2 shared Chaoyou XueiD· 1 shared Huaming DongiD· 1 shared Jianfeng HuangiD· 1 shared Jingyi CaiiD· 1 shared Peiji Zhang· 1 shared Ruoyu WangiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Hongwu MaORCID

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2 papers

Recent·Most cited

The necessity of considering enzymes as compartments in constraint-based genomescale metabolic models

Xue Na Yang, Zhitao Mao, Jianfeng Huang, Ruoyu Wang, Huaming Dong, Yanfei Zhang, Hongwu Ma

This paper identifies prediction anomalies in a constraint-based metabolic model by incorporating enzyme compartmentalization, improving pathway structure accuracy and resolving constraint conflicts.

bioRxiv · Dec 14, 2022 · PreprintBioinformatics

Integrating thermodynamic and enzymatic constraints into genome-scale metabolic models

Xue Na Yang, Zhitao Mao, Xin Zhao, Ruoyu Wang, Peiji Zhang, Jingyi Cai, Chaoyou Xue, Hongwu Ma

This paper introduces a method that integrates enzymatic and thermodynamic constraints into genome-scale metabolic models to improve pathway prediction accuracy.

Metabolic Engineering · Jun 24, 2021Peer-reviewedBioinformatics