Author

Caitlin Falconer

The University of QueenslandORCID 0000-0002-0476-7714Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:E. coli· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alex William HewittiD· 1 shared Alice PébayiD· 1 shared Anne SenabouthiD· 1 shared Brett David McKinnoniD· 1 shared Brian M. FordeiD· 1 shared David L. PatersoniD· 1 shared Grant W. MontgomeryiD· 1 shared Han Sheng ChiuiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Alex William HewittORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 5, 2022

Systematic benchmarking of all-in-one microbial SNP calling pipelines

Caitlin Falconer, Thom Cuddihy, Scott A. Beatson…·Brian M. Forde

This paper benchmarks six microbial SNP calling pipelines using multiple datasets, highlighting the variability in performance and the need for standardized benchmarking.

4 citations

E. coliwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedDec 1, 2019

Genotype-free demultiplexing of pooled single-cell RNA-Seq

Jun Xu, Caitlin Falconer, Quan Hoang Nguyen…·Lachlan Coin

scSplit demultiplexes pooled single-cell RNA-Seq samples using genetic differences inferred from the data, showing high accuracy and consistency with known truths.

94 citations

scRNA-seqstatistical model

𝕏 PostBluesky