Author

Lev Tsypin

Stanford MedicineORCID 0000-0002-0642-8468Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aaron P. TurkewitziD· 2 shared Ajay PradhaniD· 1 shared Debolina SarkariD· 1 shared Fei YeiD· 1 shared Lydia J. BrightiD· 1 shared Michael A. BertagnaiD· 1 shared Santosh KumariD· 1 shared Shan GaoiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Aaron P. TurkewitzORCID

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2 papers

Recent·Most cited

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedMar 29, 2025

Inferring gene-pathway associations from consolidated transcriptome datasets: an interactive gene network explorer for Tetrahymena thermophila

Michael A. Bertagna, Lydia J. Bright, Fei Ye…·Lev Tsypin

The paper consolidates RNA-seq and microarray data to infer gene-pathway associations in Tetrahymena thermophila, identifying known and novel functionally related genes through co-expression clustering.

2 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsSoftwareXPeer-reviewedJan 1, 2017

The Co-regulation Data Harvester for Tetrahymenathermophila: automated high-throughput geneannotation and functional inference in a microbialeukaryote

Lev Tsypin, Aaron P. Turkewitz

The paper introduces CDH, a tool that automates gene annotation and co-regulation analysis in Tetrahymena thermophila, expanding pathway insights through ortholog function inference.

5 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky