Author

Fei Ye

Qingdao National Laboratory for Marine Science and TechnologyORCID 0009-0002-7140-5833Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Fei Ye6 papers · Baylor College of Medicine

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Aili JuiD· 2 shared Fan Wei· 2 shared Shan GaoiD· 2 shared Yongqiang LiuiD· 2 shared Aaron P. TurkewitziD· 1 shared Ajay PradhaniD· 1 shared Bei NaniD· 1 shared Bo PaniD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetics

Aili JuORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GeneticsbioRxivPreprintJun 29, 2025

Bromodomain protein IBD1 bridges histone acetylation and H2A.Z deposition to fine-tune transcription and prevent hyperactivation in Tetrahymena thermophila

Zhe Zhang, Haicheng Li, Fan Wei…·Yuan‐Yuan Wang

This study identifies IBD1 as a bridge between histone acetylation and H2A.Z deposition, showing its role in maintaining transcriptional homeostasis by preventing hyperactivation.

DOI 10.1101/2025.06.29.662184

ChIP-seqDNA methylation

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedMar 29, 2025

Inferring gene-pathway associations from consolidated transcriptome datasets: an interactive gene network explorer for Tetrahymena thermophila

Michael A. Bertagna, Lydia J. Bright, Fei Ye…·Lev Tsypin

The paper consolidates RNA-seq and microarray data to infer gene-pathway associations in Tetrahymena thermophila, identifying known and novel functionally related genes through co-expression clustering.

2 citations

bulk RNA-seqstatistical model

Molecular BiologyProceedings of the National Academy of SciencesPeer-reviewedJan 15, 2025

Dual modes of DNA N6-methyladenine maintenance by distinct methyltransferase complexes

Yuanyuan Wang, Bei Nan, Fei Ye…·Shan Gao

The paper identifies two distinct methyltransferase complexes that coordinate to maintain DNA N6-methyladenine (6mA) through different mechanisms during replication and transcription.

23 citationstop 2%

DNA methylationstatistical model