Author

Lokender Kumar

Colorado School of MinesORCID 0000-0002-0692-0137Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:non-human primate· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Assay:proteomics· 1

Frequent Co-Authors

Bonnie BergeriD· 2 shared Hollie M. PutnamiD· 2 shared Jinkyu YangiD· 2 shared Judith Klein‐SeetharamaniD· 2 shared Lenore CoweniD· 2 shared Liza M. RogeriD· 2 shared Nastassja A. LewinskiiD· 2 shared Rohit SinghiD· 2 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Bonnie BergerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Decoding the Functional Interactome of Non-Model Organisms with PHILHARMONIC

Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza M. Roger, Jinkyu Yang, Nastassja A. Lewinski, Hollie M. Putnam, Bonnie Berger, Judith Klein‐Seetharaman, Lenore Cowen

PHILHARMONIC infers protein interaction networks and functional organization in non-model organisms using deep learning and spectral clustering, validated in Drosophila and coral symbionts.

Lecture notes in computer science · Jan 1, 2025Peer-reviewedBioinformatics

Transfer of Knowledge from Model Organisms to Evolutionarily Distant Non-Model Organisms: The Coral Pocillopora damicornis Membrane Signaling Receptome

Lokender Kumar, Nathanael Brenner, Samuel Sledzieski, Monsurat Olaosebikan, Liza M. Roger, Matthew Lynn-Goin, Roshan Klein-Seetharaman, Bonnie Berger, Hollie M. Putnam, Jinkyu Yang, Nastassja A. Lewinski, Rohit Singh, Noah M. Daniels, Lenore Cowen, Judith Klein‐Seetharaman

The paper develops a method to identify homologous membrane receptors in non-model corals by combining remote homology detection and functional analysis, mapping over 1000 human receptors to coral receptors.

PLoS ONE · Feb 3, 2023Peer-reviewedBioinformatics