Author

Polina Shpilker

Tufts UniversityORCID 0000-0002-6761-7326Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:non-human primate· 2 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1

Frequent Co-Authors

Hollie M. PutnamiD· 2 shared Lenore CoweniD· 2 shared Bonnie BergeriD· 1 shared Charlotte Versavel· 1 shared Danielle M. BeckeriD· 1 shared Faith Ocitti· 1 shared François SenecaiD· 1 shared Hailey McKelvieiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Hollie M. PutnamORCID

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2 papers

Recent·Most cited

Decoding the Functional Interactome of Non-Model Organisms with PHILHARMONIC

Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza M. Roger, Jinkyu Yang, Nastassja A. Lewinski, Hollie M. Putnam, Bonnie Berger, Judith Klein‐Seetharaman, Lenore Cowen

PHILHARMONIC infers protein interaction networks and functional organization in non-model organisms using deep learning and spectral clustering, validated in Drosophila and coral symbionts.

Lecture notes in computer science · Jan 1, 2025Peer-reviewedBioinformatics

Characterizing transcriptomic responses to sediment stress across location and morphology in reef-building corals

Jill Ashey, Hailey McKelvie, John D. Freeman, Polina Shpilker, Lauren H. Zane, Danielle M. Becker, Lenore Cowen, Robert H. Richmond, Valerie Jean Paul, François Seneca, Hollie M. Putnam

This study examines transcriptomic responses to sediment stress in branching and massive corals across different locations, finding species-specific and morphological differences in gene expression.

PeerJ · Jan 30, 2024Peer-reviewedBioinformatics