Author

Naixue Yang

Kunming University of Science and TechnologyORCID 0000-0002-0705-7611Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:human· 1

Frequent Co-Authors

Baihan Shen· 1 shared Bo YuaniD· 1 shared Bohan Wu· 1 shared Chonghui LiuiD· 1 shared Hengyi XuiD· 1 shared Jianwei WangiD· 1 shared Jinjun LiiD· 1 shared Longchen Xu· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Baihan Shen

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2 papers

Recent·Most cited

DPCGS: a computational framework for linking GWAS to single-cell transcriptomics in complex traits and diseases

Chonghui Liu, Bo Yuan, Baihan Shen, Jinjun Li, Ran Zhu, Pengpeng Yang, Bohan Wu, Yongquan Xuan, Siwei Yang, Naixue Yang, Longxuan Ma, Qiaoming Liu, Shaoxing Dai, Yan Zhang

DPCGS links GWAS to single-cell transcriptomics to identify trait-associated cell subpopulations and regulatory programs with higher accuracy than existing methods.

bioRxiv · Jul 31, 2026 · PreprintBioinformatics

Dissecting cell state transitions by causal inference

Longchen Xu, Tingting Cong, Hengyi Xu, Naixue Yang, Tian Chen, Sijie Yang, Ming Zhu, Rahul Sinha, Ryō Yamamoto, Wei Zhang, Jianwei Wang, Xun Lan

CIBER is a causal inference framework for analyzing cell state transitions, identifying key features in differentiation processes and predicting novel regulatory associations.

bioRxiv · Feb 8, 2023 · PreprintSystems Biology