Author

Davide Figini

Humboldt-Universität zu BerlinORCID 0000-0002-0725-0761Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 2 Organism:human· 2 Assay:protein sequence· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Benedikt M. BeckmanniD· 2 shared Erika C. UrdanetaiD· 2 shared Annalisa MarsicoiD· 1 shared Annkatrin BressiniD· 1 shared Carlos H. Vieira-VieiraiD· 1 shared Hans-Herrmann Wessels· 1 shared Jan MedenbachiD· 1 shared Matthias SelbachiD· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Benedikt M. BeckmannORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

TriPepSVM - de novo prediction of RNA-binding proteins based on short amino acid motifs

Annkatrin Bressin, Roman Schulte-Sasse, Davide Figini, Erika C. Urdaneta, Benedikt M. Beckmann, Annalisa Marsico

TriPepSVM predicts RNA-binding proteins using tripeptide frequencies, outperforming existing methods in human and bacterial species.

Nucleic Acids Research · Mar 18, 2019Peer-reviewedBioinformatics

Purification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction

Erika C. Urdaneta, Carlos H. Vieira-Vieira, Timon Hick, Hans-Herrmann Wessels, Davide Figini, Rebecca Moschall, Jan Medenbach, Uwe Ohler, Sander Granneman, Matthias Selbach, Benedikt M. Beckmann

The paper introduces a new method, PTex, to purify RNA-protein complexes without relying on polyadenylated RNA, and provides a global RNA-bound proteome for human and bacterial cells.

Nature Communications · Mar 1, 2019Peer-reviewedMolecular Biology