Author

Wai Yee Low

The University of AdelaideORCID 0000-0002-0749-765XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:Hi-C· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Adam M. PhillippyiD· 2 shared Arang RhieiD· 2 shared John Lewis WilliamsiD· 2 shared Sarah B. KinganiD· 2 shared Sergey KoreniD· 2 shared Stefan HiendlederiD· 2 shared Timothy P. L. SmithiD· 2 shared Zev N. KronenbergiD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Adam M. PhillippyORCID

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3 papers

Recent·Most cited

Seeing the forest through the trees: Identifying functional interactions from Hi-C

Ning Liu, Wai Yee Low, Hamid Alinejad‐Rokny, Stephen Pederson, Timothy J. Sadlon, Simon Charles Barry, James Breen

This paper reviews methods for identifying functional interactions from Hi-C data by classifying approaches into three categories: domain discovery, statistical significance detection, and epigenomic integration.

Epigenetics & Chromatin · Aug 28, 2021Peer-reviewedBioinformatics

Extended haplotype phasing of de novo genome assemblies with FALCON-Phase

Zev N. Kronenberg, Arang Rhie, Sergey Koren, Gregory T. Concepcion, Paul S. Peluso, Katherine M. Munson, David Porubskỳ, Kristen L. Kuhn, Kathryn A. Mueller, Wai Yee Low, Stefan Hiendleder, Olivier D. Fedrigo, Ivan Liachko, Richard J. Hall, Adam M. Phillippy, , Sarah B. Kingan

FALCON-Phase uses long-read sequencing and Hi-C data to create phased diploid genome assemblies, achieving high accuracy in non-human species but lower accuracy in humans.

Nature Communications · Apr 28, 2021Peer-reviewedGenomics

Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

Wai Yee Low, Rick G. Tearle, Ruijie Liu, Sergey Koren, Arang Rhie, Derek M. Bickhart, Benjamin D. Rosen, Zev N. Kronenberg, Sarah B. Kingan, Elizabeth Tseng, Françoise Thibaud-Nissen, Fergal J. Martin, Konstantinos Billis, Jay Ghurye, Alex R. Hastie, , John Lewis Williams

The paper presents haplotype-resolved cattle genomes to identify structural variants and adaptation traits, finding expanded immune-related gene families and a fatty acid desaturase copy under positive selection in indicine cattle.

bioRxiv · Aug 9, 2019 · PreprintGenomics