Author

Françoise Thibaud-Nissen

National Institutes of Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Organism:human· 3 Research Focus:variant calling· 3 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

Adam M. PhillippyiD· 3 shared Sergey KoreniD· 3 shared Arang RhieiD· 2 shared Karyn Meltz Steinberg· 2 shared Nathan Bouk· 2 shared Sean McGrath· 2 shared Tina Graves Lindsay· 2 shared Aaron M. WengeriD· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Adam M. PhillippyORCID

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Author profile →

4 papers

Recent·Most cited

A near-complete human pancreatic cancer genome

Justin Wagner, Ayşe Gökçe Keşküş, Keisuke K. Oshima, T. Rhyker Ranallo-Benavidez, Jennifer McDaniel, Shu-Cheng Chuang, Mile Šikić, Luis F. Paulin, Adam C. English, Fritz Joachim Sedlazeck, Elizabeth M. Munding, Zack Sanborn, Andrew W. Carroll, Pi-Chuan Chang, Daniel E. Cook, , Justin M. Zook

This paper presents near-complete, haplotype-resolved assemblies of a pancreatic cancer genome and normal tissue, identifying extensive somatic variants and epigenetic changes in previously excluded regions.

bioRxiv · May 10, 2026 · PreprintGenomics

Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

Wai Yee Low, Rick G. Tearle, Ruijie Liu, Sergey Koren, Arang Rhie, Derek M. Bickhart, Benjamin D. Rosen, Zev N. Kronenberg, Sarah B. Kingan, Elizabeth Tseng, Françoise Thibaud-Nissen, Fergal J. Martin, Konstantinos Billis, Jay Ghurye, Alex R. Hastie, , John Lewis Williams

The paper presents haplotype-resolved cattle genomes to identify structural variants and adaptation traits, finding expanded immune-related gene families and a fatty acid desaturase copy under positive selection in indicine cattle.

bioRxiv · Aug 9, 2019 · PreprintGenomics

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Valerie A Schneider, Tina Graves Lindsay, Kerstin Howe, Nathan Bouk, Hsiu-Chuan Chen, Paul A. Kitts, Terence D Murphy, Kim D. Pruitt, Françoise Thibaud-Nissen, Derek Albracht, Robert S Fulton, Milinn Kremitzki, Vince Magrini, Chris Markovic, Sean McGrath, , Deanna M Church

This paper evaluates GRCh38 and de novo haploid assemblies, finding that GRCh38 remains superior for complex genomic regions and coding sequences despite improvements in newer assemblies.

Genome Research · Apr 10, 2017Peer-reviewedGenomics

High-Quality Assembly of an Individual of Yoruban Descent

Karyn Meltz Steinberg, Tina Graves Lindsay, Valerie A. Schneider, Mark J.P. Chaisson, Chad Tomlinson, John Huddleston, Patrick Minx, Milinn Kremitzki, Derek Albrecht, Vincent Magrini, Sean McGrath, Archana Raja, Carl Baker, Lana Harshman, LaDeana W. Hillier, , Richard K. Wilson

This paper presents a high-quality de novo assembly of a Yoruban individual using multiple sequencing technologies and demonstrates the utility of diploid assembly in improving genome quality.

bioRxiv · Aug 2, 2016 · PreprintBioinformatics